Publications

解説記事

• Theoretical approaches for understanding the self-organized formation of the Golgi apparatus
  Tachikawa M
  Development, Growth & Differenciation, 12842, 2023.
• 生体膜物理モデルによるゴルジ体再集合シミュレーション
  立川正志
  生物物理　60 巻 3 号 p. 165-167, 2020.
• Molecular Dynamics Simulations of Condensin-Mediated Mitotic Chromosome Assembly
  Sakai Y, Hirano T, Tachikawa M
  SMC Complexes 14(6) 319-334, 2019.
• ゴルジ体のサイズと形の制御
  立川正志
  実験医学 2018年8月号 Vol.36 No.13, 特集　サイズ生物学
• オルガネラ形態の物理モデリング
  立川正志，望月敦史
  生体の科学 2018年06月号 Vol.69 No.3,  特集　生体膜のバイオロジー
• ゴルジ体は自己組織化する
  立川正志
  日本数理生物学会ニュースレーター  Vol.85 pp27-29, 2018.
• 細胞小器官の動きを理解する方法 – ゴルジ体の形成過程を物理で再現する
  立川正志
  Academist Journal (2017)
• シミュレーションによるゴルジ体の自己組織化的な形成過程
  立川正志，望月敦史
  実験医学 2017年9月号 Vol.35 No.14

Research Articles

• Simulation study on “ torsion ” and local structure of chromosome: Loop structure via torsion-adding loop extrusion
  Yokota H, Tachikawa M
  Journal of Advanced Simulation in Science and Engineering Vol 11(1), 54-72 , 2024.
• Evaluation of loop formation dynamics in a chromatin fiber during chromosome condensation
  Yokota H, Tachikawa M
  Progress of Theoretical and Experimental Physics Vol 2022(5), 053J01, 2022.
• Modeling Membrane Morphological Change during Autophagosome Formation
  Sakai Y, Koyama-Honda I, Tachikawa M, Knorr RL, Mizushima N
  iScience 23(9) 101466, 2020.
• Modeling the functions of condensin in chromosome shaping and segregation
  Sakai Y, Mochizuki A, Kinoshita K, Hirano T, Tachikawa M
  PLoS Comp Biol. 14(6)  e1006152, 2018.
• Dynamical pattern selection of growing cellular mosaic in fish retina
  Ogawa N, Hatsuda T, Mochizuki A, Tachikawa M
  Physical Review E 96(3) 032416, 2017.
• Measurement of caveolin-1 densities in the cell membrane for quantification of caveolar deformation after exposure to hypotonic membrane tension.
  Tachikawa M, Morone N, Senju Y, Sugiura T, Hanawa-Suetsugu K, Mochizuki A, Suetsugu S
  Scientific Reports 7(1) 7794, 2017.
• Golgi apparatus self-organizes into the characteristic shape via postmitotic reassembly dynamics.
  Tachikawa M, Mochizuki A
  Proceedings of the National Academy of Sciences of the United States of America 114(20) 5177-5182, 2017.
• Controlling segregation speed of entangled polymers by the shapes: A simple model for eukaryotic chromosome segregation.
  Sakai Y, Tachikawa M, Mochizuki A
  Physical Review. E 94(4) 042403, 2016.
• Flat leaf formation realized by cell-division control and mutual recessive gene regulation.
  Hayakawa Y, Tachikawa M, Mochizuki A
  Journal of Theoretical Biology 404 206-214, 2016.
• Mathematical study of pattern formation accompanied by heterocyst differentiation in multicellular cyanobacterium.
  Ishihara J, Tachikawa M, Iwasaki H, Mochizuki A
  Journal of Theoretical Biology 371 9-23, 2015.
• Nonlinearity in cytoplasm viscosity can generate an essential symmetry breaking in cellular behaviors.
  Tachikawa M, Mochizuki A
  Journal of Theoretical Biology 364 260-265, 2015.
• Mathematical study for the mechanism of vascular and spot patterns by auxin and pin dynamics in plant development.
  Hayakawa Y, Tachikawa M, Mochizuki A
  Journal of Theoretical Biology 365 12-22, 2015.
• Regular and irregular modulation of frequencies in limit cycle oscillator networks
  Tachikawa M
  Europhysics Letters 92(2) 20005, 2010.
• A mathematical model for period-memorizing behavior in Physarum plasmodium.
  Tachikawa M
  Journal of Theoretical Biology 263(4) 449-454, 2010.
• Fluctuation induces evolutionary branching in a mathematical model of ecosystems.
  Tachikawa M
  PloS One 3(12) e3925, 2008.
• Specific locking in populations dynamics: Symmetry analysis for coupled heteroclinic cycles
  Tachikawa M
  JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS 201(2) 374-380, 2007.
• Emergence of multi-time scales in coupled oscillators with plastic frequencies
  Tachikawa M., Fujimoto K.
  Europhysics Letters 78(2) 20004, 2007.
• Convective stabilization of saddle fixed points in an open flow system
  Tachikawa M
  PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT (161) 352-355, 2006.
• Multiplicity of limit cycle attractors in coupled heteroclinic cycles
  Tachikawa M
  PROGRESS OF THEORETICAL PHYSICS 109(1) 133-138, 2003.
• An introduction to coupled heteroclinic cycles
  Tachikawa M
  PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT (150) 449-452, 2003.